T2D Genome-Wide Association Study Risk SNPs Impact Locus Gene Expression and Proliferation in Human Islets.

TitleT2D Genome-Wide Association Study Risk SNPs Impact Locus Gene Expression and Proliferation in Human Islets.
Publication TypeJournal Article
Year of Publication2018
AuthorsKong Y, Sharma RB, Ly S, Stamateris RE, Jesdale WM, Alonso LC
JournalDiabetes
Volume67
Issue5
Pagination872-884
Date Published2018 05
ISSN1939-327X
KeywordsCell Proliferation, Cyclin-Dependent Kinase Inhibitor p15, Cyclin-Dependent Kinase Inhibitor p16, Cyclin-Dependent Kinase Inhibitor p18, Diabetes Mellitus, Type 2, Gene Expression, Gene Expression Regulation, Genetic Predisposition to Disease, Genome-Wide Association Study, Humans, Insulin, Insulin Secretion, Insulin-Secreting Cells, Islets of Langerhans, Polymorphism, Single Nucleotide
Abstract

Genome-wide association studies link the locus with type 2 diabetes (T2D) risk, but mechanisms increasing risk remain unknown. The locus encodes cell cycle inhibitors , , and ; ; and , a long noncoding RNA. The goal of this study was to determine whether T2D risk SNPs impact locus gene expression, insulin secretion, or β-cell proliferation in human islets. Islets from donors without diabetes ( = 95) were tested for SNP genotype (rs10811661, rs2383208, rs564398, and rs10757283), gene expression (, , , , , , , and ), insulin secretion ( = 61), and β-cell proliferation ( = 47). Intriguingly, locus genes were coregulated in islets in two physically overlapping cassettes: -, which increased with age, and -, which did not. Risk alleles at rs10811661 and rs2383208 were differentially associated with expression of , but not , , or , in age-dependent fashion, such that younger homozygous risk donors had higher expression, equivalent to older donor levels. We identified several risk SNP combinations that may impact locus gene expression, suggesting possible mechanisms by which SNPs impact locus biology. Risk allele carriers at coding SNP rs564398 had reduced β-cell proliferation index. In conclusion, locus SNPs may impact T2D risk by modulating islet gene expression and β-cell proliferation.

DOI10.2337/db17-1055
Alternate JournalDiabetes
PubMed ID29432124
PubMed Central IDPMC5910004
Grant ListR01 DK095140 / DK / NIDDK NIH HHS / United States
R24 DK106755 / DK / NIDDK NIH HHS / United States
UC4 DK098085 / DK / NIDDK NIH HHS / United States
UC4 DK104211 / DK / NIDDK NIH HHS / United States